I have been looking for this problem, figured someone else had it - here is my story on it, and I do not think it is gasoline related.
Basics - 2005 FJR - got it July 2004 - I have 10,500 miles on it - had a 4000 mile TBS service, all other oil changes, etc... as required.
Recently (4 weeks ago?) very hot humid Northeast day (Connecticut) - I ride 2-3 hours straight, started with a full tank - bike starts lurching, sounds like what you describe exactly - off the throttle causes a big down, then open the throttle and it surges - VERY uncomfortable - feels like it is running out of gas.. I am thinking WTF is wrong? Have a half tank - Soooo - I keep going, end up in very bad traffic - now the thing is really going up and down and the gas tank is so hot I cannot put my legs against it (I am not making this up - it was burning hot).
I start thinking what about a vapor lock type thing? Is it possible? I stopped, opened the tank and let it air out - I have about a 1/4 tank now - add 2 gallons so I have 3/4 of a tank, and the problem completely goes away AND the tank cools right off within a very short time. I'm thinking o.k. - it didn't like the long distance non-stop very hard ride (I enjoy pushing the bike) on a really hot day - I had a vacuum created in the tank. No more problems for a few days - then it does it again and I was able to fix it the same way - by opening the tank. By the way I always use 93 octane from a name brand station - and where I am they are busy stations.
What I found today - nice 75 degrees, no heat, had a passenger - the surging returned and opening the tank does NOT solve the problem - it is really bad at about 3500-3800 rpm - somewhat better but still exists at 4000-4300 rpm.
I get back from the ride, bike cools - I am a little pissed because I am wondering if it really is vapor lock at all or maybe the fuel pump? Fuel Filter? I JUST had the TBS and new plugs and air filter done two days ago - so the problem existed before and after the service.
However, this evening, with just me, it did not surge at all.
Very very strange...
Any of you have any similar experiences that do NOT seem to be TBS/plugs/air filter OR gasoline quality related?
Thanks for ANY information - I love this bike and ride it a lot - just getting concerned it might be a bigger issue than I thought -
Allen Hamlin - Connecticut STAR Chapter 168, Harttford