If you'd be interested in the AutoTune module, then get the PCV. The AutoTune allows you to specify desired air/fuel ratios (AFR) at all the different throttle/RPM combinations, then uses a wide band O2 sensor in the exhaust to measure the actual AFR and automatically tunes itself until the desired AFRs are achieved. Your bike is continuously fine-tuned for current conditions as you ride it. With the AutoTune, you could perform further modifications to the bike (like air box mods) in the future and your bike will automatically tune itself to make the best of the modifications.
If you don't care about AutoTune and will never want it, then save some money and get a PCIII... assuming that you can get a hold of a PCIII map for your specific exhaust, etc. Otherwise, you'd need to get a custom map tuned on a dyno for your bike. The cost of a PCV + AutoTune probably isn't that much more than a PCIII + custom tuning, so the PCV would probably be the better choice.