This problem occurs more often on bikes like the FJR with a high torque motor. This happened with my 04, but with much higher mileage. The problem got progressively worst until it spread to 4th gear, which became unusable. I eventually replaced the motor at 116,000 mile with one from Ebay. Replacing the entire motor is cheaper than fixing the transmission, unless it's under warranty? And, like others have said, it always starts with second gear. If it's just starting to happen, you might be able to extend it's lifespan by babying second gear If it's happening frequently, my suggestion would be to keep an eye out on Ebay for a good used unit with low miles. Sorry to reenforce the bad news. Hopefully with the low miles you can get Yamaha to cover it?