My thoughts exactly - in John's case, the previous owner had just done a valve adjust and messed it up. If your bike hasn't had the cams out, I would start elsewhere. With John's bike, my first suspicion was the battery since my FJR runs like crap when the battery is weak. The big difference, though was that his bike was running very rich.Other than behavior, is there a reason to suspect timing is off? Recent valve adjustment service, CCT change? Clattering noises on tight side when engine is cold (bad CCT)? If not. I would look at some of the other possibilities first, including stuff in this thread and what I posted in your intro thread.
Checking the cam timing isn't that hard but it's not easy to see the cam marks with the engine in the bike. It takes a mirror to really see it.
Fixing the problem (if it is out) is much harder. The FSM is pretty good for these bikes and a great investment if you don't already have one.