Wow, thanks for all the replies guys! I really have an appreciation for active forums where you don't have to wait days and weeks for responses.
Ok so, I'm just going to throw out some of the things I've read about and heard other FJR owners having problems with. I'm not completely educated and don't know everything about this bike. Some of the issues I've heard about might only apply to the 1st Gen models... and some issues might only apply to the 2nd Gen models. But that's why I'm here... to ask the "source", actual FJR riders. To be honest, I wasn't even aware of that many issues on the 2nd Gen models.
The issues I was concerned about are:
-Heat. Which honestly doesn't bother me anymore. I always ride fully geared and can do some of the mods/fixes you've talk about for the tank, etc. Plus, the heat might help extend my riding in the cold months here in Chicago.
-The "Ticker" problem. This is by far my biggest concern. I love modding bikes, and have put lots of aftermarket parts on my FZ6 to make it more comfortable. So the heat issue above, I can take care of on my own. But I dread the thought of having mechanical issues. I know this is a rare problem, but I've also read about some bikes not getting it until the 20k mike range. The FJR's that I'm looking at have around 10k-15k miles. I just don't want to be stuck with a serious engine problem down the road. I've tried to find some good audio clips to educate myself on what to listen for when I'm looking at used FJR's. I found a post here, seems like the audio is really good, but the links are down -
"Ticker" Post
-Alternator. Now I don't know if this is really an issue, but the 2nd Gen's have an upgraded alternator. This makes me think that the alternator on the 1st Gen's might not have been sufficient enough. I don't know though. What I do know is that I love gadgets on my bike. Heated grips, GPS, phone charger, extra lighting, etc. Do you 1st Gen owners have any problems in this area?
-Other misc. problems. I know with my FZ6 the 04-05's had fuel injection timing problems. Yamaha fixed the issues for the 06 models, then totally redesigned the 07 and up. The 07+ are so much better than the 1st Gen FZ6's (better speedo, much better windscreen design, better brakes, rubber mounting on passenger pegs to reduce vibration, etc). I guess that was also ingrained in my head so much that I've always viewed the FJR's to be similar. Lots of new bikes have issues and such with the first few years, then the manufacturer corrects the problems that people complain about in the 1st Gen models and come out with a much better 2nd Gen model. That was always my
uneducated view of the FJR, the 1st Gen's are inferior.
Again, I don't really hear about many issues on the 2nd Gen FJR's, but I'm also probably not looking in the right places either. It sounds like you guys are saying the 1st Gen FJR's are better than the 2nd Gen. What other changes do the 2nd Gen's have that I would like? What did they change regarding the instrument cluster? I know a glove/storage box was added in 04 and power outlet sometime after as well. Which years have heated grips?
One other thing I have not mentioned until now is the seating position. I know this is a "sport" touring bike, but I definitely like more of an upright seating position. My stock FZ6's bars were too low to ride comfortably for a long period of time. I added 1 in. up and back risers and that made it much better. I'm sure the FJR isn't completely upright even with risers, but is it pretty comfortable for long trips? I also have problems with wind protection and helmet buffeting on my FZ6. I'm 5'6" so a little on the shorter side. The stock windscreen sends the wind right at my neck and right up my helmet (very annoying and very loud). I have a really tall Cal-Sci (and actually a Cee Bailey's too) that works great for wind protection but I cook in the summer since I have no airflow going into my helmet vents. Any medium size screen sends the air right in the center of my helmet causing tons of buffeting and noise. So I either ride with a chopped/smaller stock screen or a really tall aftermarket screen. How's the screen on the FJR? Does the adjustability up and down make a big difference? I love how Goldwings have huge screens but have vents you can open to actually get some airflow... that sounds like a dream for me.
Anyway, sorry to be so long winded. It's just hard finding the right bike. Rarely do you get to test ride them, and if you do, it's not long enough to really get a feel for some of the things I talked about. Comfort issues can sometimes only be detected on longer rides over 2 hours. So you almost have to just buy the bike and see if it's right for you... if not, sell it and find another. I'm actually thinking of getting the Connie since it's so cheap and also get the FJR. I may get rid of the FZ6, I'm not sure. Decisions, decisions...