I owned a Trophy 900 triple. Yes it is somewhat redundant in purpose to an FJR, but it was most definitely a different tool with a completely different character.
Zilla', I don't think ronhawker said anywhere that the Trophy would outperform an FJR, just that it feels lighter (which it most definitely is) and more responsive. Having owned and extensively ridden both bikes, I think the responsive part he is talking about is due primarily to the old bike having carburetors. There is a certain connected feeling that you get from a carby bike that you will never achieve with fuel injection. The herky jerky feeling when you roll off and on the throttle can be minimized on an FI bike, but never completely eliminated as the ECU cuts off the fuel under a chopped throttle. Instead you have to learn to adapt to it and become smoother yourself.
For me the big deal breaker of the Trophy triple was the heat. The little Trophy spewed a gawd awful amount of heat on the rider. And to put that in perspective, remember that I am perfectly happy with my '05 FJR's heat output. In the end, after I got the little Trophy running like a top (it wasn't when I bought it) I Craigs Listed it off to a nice guy from Lewiston, Maine, and parlayed that into the '04 Man-strom I now own.