ABS can apply the brakes without lever pressure, that’s why you hear a motor running during abs stops. Sounds like you have a new option like traction control!
The way I read the FJR shop manual (pages 1-18 and 1-19), HuskyRider is correct. When the ABS is activated, a pump recirculates brake fluid in a loop as the pressure is reduced to the calipers. As the brake reapplies (pulses), a solenoid valve alternately lets this pressure go to the caliper or be recirculated. If that pump activates when there is no peddle pressure from rider inputs, it will be just like pulling the brake handle or foot pedal. The bike is gonna stop!
This condition is scares the daylights out of me! Go get your ABS system fixed! It's supposed to throw error codes when something goes wrong, but I don't know if this sort of failure will be detected... It may be the system detects a wheel lockup due to bad wheel sensors and the pump activates. Donno...