Update for those who expressed interest:
1) No codes were present
2) We swapped in a brand new fully charged battery - no change.
3) We cleaned all the vac lines to the MAP sensor and swapped the sensor for a spare that I have - no change
3) Checked the TPS thoroughly, no issues that we could detect. It was slightly out of range at idle, showing 18 on the dash display, so we adjusted back to 16, also adjusted the throttle cable free play.
4) The bike was running very rich - in fact the exhaust and the plugs were completely sooted up:
5) We swapped out the plugs and cleaned the O2 sensor (we also swapped in my O2 sensor for S&G's but no change).
6) The TB sync was off, so we brought it back into sync and the bike was running much better. John was happy at this point, since getting the sync right made a big difference to how the bike was running.
But - there are still some issues:
We had to max out the idle speed adjuster to get to 1100rpm hot.
The bike is still running rich
The bike has a stumble just off idle
The bike doesn't seem to kick into fast idle when cold, it idles right around 1000rpm (or below)
Getting the sync was a struggle, since #3 air bleed adjuster made almost no change to the vacuum. I know that #3 is the one to use as a base (per the FSM) but I'd have liked to get all of the bleeds open a bit more to bring the idle more into spec at the middle of the adjuster range. I basically had to just balance everything to #3 as it was.
So, next steps - It'll be a few weeks til we can get together again:
Check for the Barbarian mod - I didn't think of this until John left but the super-rich low end could be because of that.
Clean out the air bleed circuits - I'm hoping this will help with both the idle speed and the fast idle speed. My plan is to use TB cleaner through the ports with the bleed screws turned out. I'm not crazy about removing the brass screws completely because of the difficulty in accessing them and the probability of losing them.
Clean the throttle bodies generally (?) - I'm guessing the off-idle stumble could be crud behind the throttle plates.
We could also try pulling the entire TB assy and replacing it with my spare, but that would be a lot of work.
I may have forgotten something that we did or may be missing something to look at. Suggestions/comments?