I'm told and understand my experience with getting my bike back on the road 5 months after my CCT and my neglect grenaded my '04 engine at 96k mi is very fortunate.
This was July '09 busted and first ride Dec 6th.
I am fortunate to have a very experienced independent shop 100mi away who pulls engines all the time. When I've gone there with friends, there are Harley, Goldwing, and crotch rocket engines on the bench, and young Aaron is a dedicated speed guy racing bikes and corvettes.
His Dad ownes the shop in the countryside of Mississippi, and they charge $50 an hr.
They offered to find me a reliable engine by putting the word out to their past contacts on a nationwide salvage system for an engine that proved unsuccessful over 4 weeks.
I looked on ebay and spotted an '05 salvaged engine from an accident. It was the cheapest I found at $600 shipped. The other 3 advertised were $1000. This seller had excellent feedback on 4 engines sold (for other bikes) in the previous 90 days. The owner advertised his phone # and I called him with my concerns and other nightmares on "bad" engines purchased by forum member Ionbeam. He was gruff & impatient with me pointing out his feedback , thousands of parts sold, and multiple engines. He said frequently engines are stripped of the starter, stator, clutch to be sold separately. He sells complete engines less the fuel injection. He pointed out he runs the engines he sells before pulling them from the frame and videos that testing for his records and to protect himself. He reluctantly offered to email the video and that the crunched bike was a recent purchase and engine still in the frame. It was a frontal crash with forks bent back to the radiator. Claimed miles was 10k.
On this, I purchased the engine and had it shipped to the shop in MS. He said it was tricky with ebay not shipping merchandise to the address on record.
Then, providing a shop manual to Aaron, I dropped off the bike. Aaron admitted never working specifically on a FJR, but lots of experience with R1'S & FZ1'S. hh showed no hesitation, but had no idea how long it would take. Repeated the commitment to have it done right, not fast. He took extreme pride in his work.
It was done perfectly with no, none, nada issues from the day it was delivered.
I'm amazed to this day. Charge: 12 hrs x $50 = $600 labor.
I deeply am thankful for all this and deeply hope it could be repeated by others.
plus engine @ $600 = $1200. I provided all fluids, filters, plugs to them.
All the advice I recieved was NOT to consider fixing the engine for all the unknowns attached, but to either replace the bike, possibly parting out the bike. But first look into replacing the engine.
In my case, the trauma of pistons going into valves made damages to the engine potentially extensive.
I really hope this helps.
my threads:
https://www.fjrforum.com/forum/index.php?showtopic=123064
https://www.fjrforum.com/forum/index.php?showtopic=124314
ponderings of head repair:
https://www.fjrforum.com/forum/index.php?showtopic=121357