How you leave the line varies from person to person and makes a big difference in clutch heat and clutch life. I'm somewhat hard on the clutch – and I don't know exactly what RPM I leave the light because I do it by feel and put all my attention on the light. If you are looking at the tach you will blow your reaction times. I do run up the RPMs to around 4-5k RPM and feed as much clutch as quickly as I can. I balance wheel spin vs wheelie as much as possible. I usually slightly carry the front wheel giving me the best weight transfer to the rear wheel. When Feejer's suspension is set up and tire pressure is set correctly you should hook up good enough that wheel spin won't be an issue because it will lift the front wheel first. I typically have no worse than a 1.7x 60 foot times and can sometimes get into 1.6x 60 foot times depending on track condition. Traction compound rocks! New England Dragway treats the stuff like gold and rarely uses it where as Lebanon Valley Dragway (near Albany, NY) slathers the stuff on. Both my car and my FJR always have significantly better times at LVD.
Time slips show that the best RPM to shift at is between 8.5k and not more than 9k. On a cold night I may run close to 9k RPM and on a hot night I may shift closer to 8.5k. I have a real problem with the 1-2 shift because I can't get my foot on the shifter fast enough after a good launch so 1-2 shift RPMs are usually a bit too high. I have ticked the rev limiter a couple of times being late on the 1-2 shift. Being fat, old (and ugly) is catching up with me on the 1-2 shift.
[Edited to add: Guess I'm a candidate for an AE, eh?]
What's with the pro stock Harley? That puppy is a dedicated racing machine and can run 7.00 quarters. NHRA rules allow it to have more weight and gives it other consessions to make it competitive with the Ricers. In bracket racing they would spot your FJR ~4.1 seconds at the lights.