I may have found the issue of this "burnt rubber" type of smell from some FJR owners...like me. I do not know all the engine designs but mine has a plate (that is all Yamaha calls it) with rubber slots that sits on top of the engine just below the air box and adjacent to the top of the clutch plate housing. I do not know exactly why Yamaha added this plate except to think that part of the engine must get a bit hotter than the rest and this plate with the rubber channels helps to move the heat in different directions than just upwards. I would show some pics, but for some reason I can't get them in this message from my computer. On Yamaha Parts Nation it is part # 31 item 5JW-15113-00-00 at https://www.yamahapartsnation.com/oemparts/a/yam/5286992af8700230dc2a74cb/crankcase The rubber must get so hot that it makes this smell. If you take a flash light and look just behind the top bolt on the clutch cover to the third bolt going counter clockwise you will see these "vents" running on top of the motor just behind the clutch housing.