The problem was:
There is a slight bog and flat spot on opening the throttle which requires additional throttle in order to get the bike moving. When increasing the throttle slightly there is no RPM increase or torque available, and yes, the throttle cable is tight. On a slight hill with a passenger, I had to increase the RPMs to 2K in order to get past the flat spot and move the bike forward.....made me sound like a total clutch newbie (been riding for 46 years). Obviously it is less a problem with one person on the bike aimed downhill, but it is still there.
A quick blip of the throttle from idle to about 1/16 throttle in neutral illustrates the problem as a bog and then (delayed) rapid increase in RPM. Blips of greater throttle rotation than 1/16 just power through the bog and it is not as noticeable.
My parking garage at work has a speed limit less than the idle speed of the FJR in first gear (haha!). While rolling just off idle in first gear the engine runs rough and surges. Applying additional throttle to increase the idle by ~500+ RPM over idle, and thus past the flat spot, smooths the engine out.
I took the bike in [two days ago] for the 600 mile service and described the problem for the service manager and asked them to set the vacuum on each cylinder as close as they can, instead of the 10mm Yamaha specification.
The bike is brand new, so "dirty anything" [was] not likely the problem (though I can be educated). I figure I will get the cylinders synced, get past the 1K miles break-in threshold, and go from there. I haven't tried it in Touring mode because I am old school and want "all the power all the time with minimum throttle thank you". The other reason I have not tried it in Touring mode is because having dual modes is no excuse for one mode not being mapped correctly (potentially). The bottom line is I want it fixed in Sport mode because that is the mode in which I ride.
The solution was:
Well, I received my 15 ES back from the dealer after the 600 mile service. The service manager stated the off-idle bog was fixed, and if I had any further issues to bring it right back. Nice folks at Capitol Yamaha in Sacramento.
The minute I released the clutch leaving the parking lot I could tell they had fixed my problem via the synchronization of the intakes. There was appropriate torque to initiate movement of the bike with reasonable throttle, and I found as I rode that the synchronization had eliminated what had been a wicked vibration from idle all the way to 3500 RPM. The work also lowered the amount of "compression braking" experienced on closing the throttle from 4000 RPM at speed.
It now clutches normally from a start given a heavy bike with a tall first gear
. No driveability issues related to the throttle at all....normal FI throttle performance.
Could not be happier!!