Yep, I've had AK20s and a Penske on my FZ1 for about 7 years now. LOVE it. Will be getting a Penske for the FJR soon as well as transplanting the AKs from the FZ to the FJR.
Lee is also the Guru for the FZ1 suspension.
Check with Lee as to whether the shim stack is the same between the FZ1 and the FJR. I'm thinking there is enough weight difference between the bikes that there may be some differences in the valving. Just to add a thought to what Skooter was saying about suspension tuning being an art, there is what the suspension is actually doing and then there is what the rider perceives what the suspension is doing. If the rider is not confident with what the suspension is doing then the rider will not take the bike to the edge. It is pretty common for a race team with identical bikes have different suspension settings for each rider's preferences on how the rider wants the bike to feel.
Also suspension settings that work for the nice smooth twisties in North Carolina work poorly in New England where a softer or more compliant suspension does a better job of keeping the bike on track amongst the frost heaves in the corners.