Reviving this old thread again to voice my appreciation to mcatrophy for the excellent, detailed write-up.
I had been having issues shifting down from 5th to 4th and 4th to 3rd, especially, but all downshifts had been difficult at times. I wasn't too optimistic that it would correct my issues, but I figured it was cheap and easy enough to try the clutch soak as a first attempt.
I completed the job yesterday, after leaving the clutch plates (including the spacers) to soak in regular motor oil overnight. I took the bike out for a test ride, and I had no issues at all with the shifting. In fact, I would have to say that the transmission was shifting more smoothly than it ever has before. This is an '06 that I have had since 2008.
A note on my experience:
The first time I started the motor after re-assembly, I could not pull the clutch lever. I shifted into 1st from neutral with the motor running, and it stalled, so I figured something was very wrong. I started disassembly, again.
Before all of the bolts were out of the clutch cover, I tried the lever again, and it seemed to work fine. I also realized that the side stand was down, so OF COURSE it would stall when I put it into gear! So I stopped disassembly and put it all back together again.
This time, it seemed to work fine. The transmission sounded very clunky going through the gears on the centerstand, but there was no sticking. I decided to go ahead with the test ride, and I am glad I did.
I did not use the new gasket that I had purchased in advance. The old one looked fine, and since there's almost no oil in the clutch chamber, I figured there was very little chance of any noticeable leaking even if the seal were not perfect.
10/10, would recommend.