In Sport Rider Magazine (oct 05) they indicate that there will indeed be two versions of the FJR 1300. The main difference between the two models is the electronic transmission on the E model. Apparently "All the rider does is tell the ECU to change gears by either a pair of buttons on the left handlebar (thumb operated for downshifts, index finger for upshifts) or a lever residing in the conventional gear lever's location, which is attached to a sensor unit, not the transmission. There is no clutch lever; the electro-hydrolic gearbox not only controls shifting, but also manipulates clutch action on take-off, stopping, and shifting in both acceleration and deceleration." Adds 17.6 lbs. There are other changes with the E version to read about but thought this would be the one you all would appreciate (or not)reading about.
VFRMike