Are you sure the 06 has the baro sensor? I am pretty sure it does not. I am looking at the factory manual now for Gen II (page 7-7, item 12) and it is only showing one for 06 & 07, an intake pressure sensor. I also remember going over the parts fiche diagrams from Gen I and Gen II that Mick provided. The 06 (and the 07) does not have the baro sensor nor does it have the pressure regulator that the Gen I had. To recap Gen I had an intake pressure sensor, a baro pressure senosr, and a pressure regulator. 07 (and 06 as far as I know) had only an intake sensor. If you have heard otherwise from an engineering person then this is significant. Any chance you can verify this? Some strange things going on here.
Al
I don't see where he mentioned anything about the baro sensor.
I think it's pretty much a given that the Gen II FJRs (06 & 07) DON'T have the the 2nd sensor - the baro sensor, that the Gen I bikes have. So it's NOT a baro sensor problem as most 06 bikes work fine. IOW, there were no hardware or sensor changes from 06 to 07. So the problem must be some sort of software isse (ECU). So
So to me, an ECU change, or fix, seems logical, as it seems somehow the ECU stopped sampling the intake pressure for FI adjustments from 06 to 07.